feat: implement K{coop}-L{floor} standard, smart discovery, multi-coop runner, and move test runs to test_run_folder

test_run_folder/test_run_mortality.sh

@@ -0,0 +1,49 @@
+#!/bin/bash
+set -euo pipefail
+
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+export PYTHONPATH="$SCRIPT_DIR/src"
+
+if [ -f "$SCRIPT_DIR/venv/bin/python" ]; then
+    PYTHON="$SCRIPT_DIR/venv/bin/python"
+else
+    PYTHON="python3"
+fi
+
+CONFIG_FILE="${CONFIG_FILE:-configs/mortality_config.yaml}"
+INPUT_PATH="${1:-}"
+OUTPUT_DIR="${2:-}"
+
+echo "=== Starting Whole-Image Mortality Chicken Detection ==="
+echo "Config File: $CONFIG_FILE"
+if [ -n "$INPUT_PATH" ]; then
+    echo "Input Path Override: $INPUT_PATH"
+fi
+if [ -n "$OUTPUT_DIR" ]; then
+    echo "Output Dir Override: $OUTPUT_DIR"
+fi
+
+CMD=($PYTHON -m chicken_counter.cli mortality --config "$CONFIG_FILE")
+
+if [ -n "$INPUT_PATH" ]; then
+    CMD+=(--input "$INPUT_PATH")
+fi
+if [ -n "$OUTPUT_DIR" ]; then
+    CMD+=(--output-dir "$OUTPUT_DIR")
+fi
+if [ -n "${CONF:-}" ]; then
+    CMD+=(--conf "$CONF")
+fi
+if [ -n "${IOU:-}" ]; then
+    CMD+=(--iou "$IOU")
+fi
+if [ -n "${MIN_AREA:-}" ]; then
+    CMD+=(--min-area "$MIN_AREA")
+fi
+if [ -n "${DEDUPE_RADIUS:-}" ]; then
+    CMD+=(--dedupe-radius "$DEDUPE_RADIUS")
+fi
+
+"${CMD[@]}"
+
+echo "=== Mortality Detection Completed ==="